Journal Publications


  • Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J.; Cavalli, Marco; Wadelius, Claes; Komorowski, Jan (2016). "Maps of context-dependent putative regulatory regions and genomic signal interactions". Nucleic Acids Res 44(19):9110-9120. DOI: https://doi.org/10.1093/nar/gkw800
  • Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev; Kruczyk, Marcin; Pan, Gang; Komorowski, Jan; Wadelius, Claes (2016). "A Significant Regulatory Mutation Burden at a High‐Affinity Position of the CTCF Motif in Gastrointestinal Cancers". Human Mutation 37(9):904–913. DOI: 10.1002/humu.23014

  • Book Chapters


  • Draminski, Michal; Dabrowski, Michal J.; Diamanti, Klev; Koronacki, Jacek and Komorowski Jan (2016). "Discovering Networks of Interdependent Features in High-Dimensional Problems". Big Data Analysis: New Algorithms for a New Society, Vol. 16 pp. 285-304. DOI: 10.1007/978-3-319-26989-4

  • Conference Publications


    1. Diamanti, Klev; Kanavos, Andreas; Makris, Christos and Tokis, Theodoros (2014). "Handling Weighted Sequences employing Inverted Files and Suffix Trees". WEBIST 2014 - Proceedings of the 10th International Conference on Web Information Systems and Technologies, Vol. 2, pp: 231-238. DOI: 10.5220/0004788502310238

    Talks


  • Diamanti, Klev. "tfNet: Genomic landscape of putative regulatory regions and TF interactions". EpiChro: Epigenetics and Chromatin 2016, Karolinska Institute, Stockholm, Sweden.
  • Diamanti, Klev. "Maps of regulatory regions and genomic signal interaction networks". The 1st Symfonia Meeting 2015, Warsaw, Poland.

  • Conference Abstracts/Posters


  • Umer, Husen M.; Dabrowski, Michal J.; Cavalli, Marco; Kruczyk, Marcin; Diamanti, Klev; Wadelius, Claes and Komorowski, Jan (2016). "Characterizing the role of somatic mutations on gene regulation in cancer whole genome sequences". Swedish Bioinformatics Workshop 2016, Linköping, Sweden, 20-21 October 2016. URL
  • Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J.; Cavalli, Marco; Wadelius, Claes and Komorowski, Jan (2016). "De novo maps of putative regulatory regions and genomic signal interactions". Swedish Bioinformatics Workshop 2016, Linköping, Sweden, 20-21 October 2016. URL
  • Umer, Husen M.; Dabrowski, Michal J.; Cavalli, Marco; Kruczyk, Marcin; Diamanti, Klev; Wadelius, Claes and Komorowski, Jan (2016). "Mutated motifs for CTCF and other transcription factors affect nearby cancer genes". Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor Laboratory, Cold Spring Harbor, USA 15-19 March 2016. URL
  • Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J.; Cavalli, Marco; Wadelius, Claes and Komorowski, Jan (2016). "De novo maps of putative regulatory regions and genomic signal interactions". Understanding the Function of Human Genome Variation (K1), Uppsala Konsert & Kongress, Uppsala, Sweden 31 May - 04 June 2016. URL
  • Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Dabrowski, Michal J.; Cavalli, Marco; Wadelius, Claes and Komorowski, Jan (2016). "Genome-wide maps of putative regulatory regions and genomic signal interactions". Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor Laboratory, Cold Spring Harbor, USA 15-19 March 2016. URL
  • Komorowski, Jan; Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev; Kruczyk, Marcin and Wadelius, Claes (2016). "Mutated motifs for CTCF and other transcription factors affect nearby cancer genes". Systems Biology: Global Regulation of Gene Expression, Cold Spring Harbor Laboratory, Cold Spring Harbor, USA 15-19 March 2016. URL
  • Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev; Kruczyk, Marcin; Komorowski, Jan and Wadelius Claes (2015). "A novel strategy for identifying candidate regulatory mutations in noncoding regions of cancer genomes". EMBL Conference - Cancer Genomics, Heidelberg, Germany 1-4 November 2015. URL
  • Wadelius Claes; Umer, Husen M.; Cavalli, Marco; Dabrowski, Michal J.; Diamanti, Klev; Kruczyk, Marcin and Komorowski, Jan (2015). "Cancer genes are found near mutated motifs for CTCF and other transcription factors". EMBL Conference - Cancer Genomics, Heidelberg, Germany 1-4 November 2015. URL
  • Dabrowski, Michal J.; Draminski, Michal; Diamanti, Klev; Koronacki, Jacek and Komorowski, Jan (2015). "Immune system genes expression: discovering interdependencies and providing ancestry specific marks". EMBO Excelleence in Life Sciences - Young Scientists Forum 2015, Warsaw, Poland, 2-3 July 2015. URL
  • Diamanti, Klev; Umer, Husen M.; Kruczyk, Marcin; Cavalli, Marco; Wadelius, Claes and Komorowski, Jan (2015). "Detection of putative regulatory regions and genomic signal interactions". RECOMB 2015, the 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland, 12-15 April 2015. URL
  • Dabrowski, Michal J.; Draminski, Michal; Diamanti, Klev; Koronacki, Jacek and Komorowski, Jan (2015). "Discovering interdependencies in genomic data and the case of immune system genes". RECOMB 2015, the 19th Annual International Conference on Research in Computational Molecular Biology, Warsaw, Poland, 12-15 April 2015. URL
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